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pdcd6ip programmed cell death 6 interacting protein [ Ictalurus punctatus (channel catfish) ]

Gene ID: 100304962, updated on 24-Aug-2024

Summary

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Gene symbol
pdcd6ip
Gene description
programmed cell death 6 interacting protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (9832933..9847600, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (7766498..7781165, complement)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene zinc finger TRAF-type containing 1 Neighboring gene cAMP-regulated phosphoprotein, 21 Neighboring gene upstream binding protein 1 Neighboring gene cytoplasmic linker associated protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death 6-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    9832933..9847600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017454741.3 → XP_017310230.2  programmed cell death 6-interacting protein isoform X2

    UniProtKB/TrEMBL
    A0A2D0PYP1

  2. XM_017454740.3 → XP_017310229.2  programmed cell death 6-interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A2D0PW11, W5UIS8
Nucleotide Protein
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Gene LinkOut

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