HAVCR1 hepatitis A virus cellular receptor 1 [Sus scrofa (pig)] - Gene

Summary

Gene symbol: HAVCR1
Gene description: hepatitis A virus cellular receptor 1
See related: Ensembl:ENSSSCG00000017061
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Biased expression in ovary (RPKM 3.7) and spleen (RPKM 0.3) See more
Orthologs: human all
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Genomic context

Location:: chromosome: 16

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	16	NC_010458.4 (66162318..66208868)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	16	NC_010458.3 (71949487..71963277, complement)

Chromosome 16 - NC_010458.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

CRSP9 (e-PCR)
- UniSTS:504867

MARC_21827-21828:1025099615:1 (e-PCR)
- UniSTS:268641

MARC_9635-9636:996688484:1 (e-PCR)
- UniSTS:269959

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables phosphatidylserine binding	IEA Inferred from Electronic Annotation more info	PubMed
enables virus receptor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in phagocytosis, engulfment	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of mast cell activation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cell surface	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: hepatitis A virus cellular receptor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001164736.1 → NP_001158208.1 hepatitis A virus cellular receptor 1 precursor

See identical proteins and their annotated locations for NP_001158208.1

Status: PROVISIONAL

Source sequence(s)

GQ421749

UniProtKB/TrEMBL

A0A8D0MIQ9, A0A8D0RIR9, C8CLK5

Conserved Domains (2) summary

smart00410
Location:24 → 124

IG_like; Immunoglobulin like

pfam07686
Location:22 → 107

V-set; Immunoglobulin V-set domain