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iro iroquois [ Saccoglossus kowalevskii ]

Gene ID: 100302711, updated on 19-Oct-2023

Summary

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Gene symbol
iro
Gene description
iroquois
See related
EnsemblRapid:GeneID_100302711
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Saccoglossus kowalevskii
Lineage
Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus
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Genomic context

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See iro in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Skow_1.1 (GCF_000003605.2) Unplaced Scaffold NW_003137831.1 (449132..454603)

NW_003137831.1Genomic Context describing neighboring genes Neighboring gene protein fantom-like Neighboring gene ankyrin repeat domain-containing protein SOWAHB-like Neighboring gene carbonic anhydrase-related protein-like Neighboring gene uncharacterized LOC102810141

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003137831 unplaced scaffold reference Skow_1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anteroposterior patterning in hemichordates and the origins of the chordate nervous system. Lowe CJ, et al. Cell, 2003 Jun 27. PMID 12837244

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164887.2 → NP_001158359.1  iroquois

    See identical proteins and their annotated locations for NP_001158359.1

    Status: PROVISIONAL

    Source sequence(s)
    AY313149
    UniProtKB/TrEMBL
    Q7YTC4
    Related
    NP_001158359.1, NM_001164887.2
    Conserved Domains (1) summary
    pfam05920
    Location:156 → 195
    Homeobox_KN; Homeobox KN domain

RefSeqs of Annotated Genomes: Saccoglossus kowalevskii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Skow_1.1 Primary Assembly

Genomic

  1. NW_003137831.1 Reference Skow_1.1 Primary Assembly

    Range
    449132..454603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006820336.1 → XP_006820399.1  iroquois

    Related
    XP_006820399.1, XM_006820336.1
    Conserved Domains (1) summary
    pfam05920
    Location:156 → 195
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials