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SmE Small ribonucleoprotein particle protein SmE [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100302488, updated on 15-May-2024

Summary

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Gene symbol
SmE
Gene description
Small ribonucleoprotein particle protein SmE
See related
EnsemblRapid:GeneID_100302488V25
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Also known as
NV25
Orthologs
fruit fly all
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Genomic context

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See SmE in Genome Data Viewer
Location:
chromosome: A3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A3 NC_042496.1 (22932088..22933281)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383868.1 (281476..282669)

Chromosome A3 - NC_042496.1Genomic Context describing neighboring genes Neighboring gene thioredoxin domain-containing protein 9-like Neighboring gene 3 exoribonuclease-like Neighboring gene protein abrupt Neighboring gene CD82 antigen

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein E

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163367.1 → NP_001156839.1  small nuclear ribonucleoprotein E

    Status: VALIDATED

    Source sequence(s)
    AK340722
    UniProtKB/TrEMBL
    A0A8R1XIW8
    Related
    NP_001156839.1, GeneID_100302488M_001163367.1
    Conserved Domains (1) summary
    cd01718
    Location:9 → 87
    Sm_E; Sm protein E

RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042496.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    22932088..22933281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials