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SPATA5 spermatogenesis associated 5 [ Bos taurus (domestic cattle) ]

Gene ID: 100297992, updated on 17-Aug-2024

Summary

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Official Symbol
SPATA5provided by VGNC
Official Full Name
spermatogenesis associated 5provided by VGNC
Primary source
VGNC:VGNC:35187
See related
Ensembl:ENSBTAG00000000125
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SPATA5 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (34415115..34747090, complement)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112442026 Neighboring gene uncharacterized LOC132342596 Neighboring gene microRNA mir-12036 Neighboring gene sprouty RTK signaling antagonist 1 Neighboring gene small nucleolar RNA SNORA11 Neighboring gene uncharacterized LOC132342597 Neighboring gene U4 spliceosomal RNA Neighboring gene chondroitin sulfate N-acetylgalactosaminyltransferase 2-like Neighboring gene nudix hydrolase 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 5; ATPase family gene 2 protein homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    34415115..34747090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002694399.6 → XP_002694445.5  ATPase family gene 2 protein homolog A isoform X1

    UniProtKB/TrEMBL
    A0AAA9RXI8, F1MFP1
    Related
    ENSBTAP00000075866.1, ENSBTAT00000104834.1
    Conserved Domains (2) summary
    smart01073
    Location:58 → 127
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    cl27568
    Location:316 → 882
    TIP49; TIP49 C-terminus

  2. XM_024977592.2 → XP_024833360.1  ATPase family gene 2 protein homolog A isoform X4

    UniProtKB/TrEMBL
    F1MFP1
    Conserved Domains (2) summary
    smart01073
    Location:1 → 60
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    cl27568
    Location:249 → 815
    TIP49; TIP49 C-terminus

  3. XM_024977591.2 → XP_024833359.1  ATPase family gene 2 protein homolog A isoform X3

    UniProtKB/TrEMBL
    A0A3Q1MIV9
    Related
    ENSBTAP00000000136.7, ENSBTAT00000000136.7
    Conserved Domains (2) summary
    smart01073
    Location:58 → 127
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    cl27568
    Location:316 → 828
    TIP49; TIP49 C-terminus

  4. XM_024977590.2 → XP_024833358.1  ATPase family gene 2 protein homolog A isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LSW3, F1MFP1
    Conserved Domains (2) summary
    smart01073
    Location:58 → 127
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    cl27568
    Location:316 → 828
    TIP49; TIP49 C-terminus

  5. XM_059876279.1 → XP_059732262.1  ATPase family gene 2 protein homolog A isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LSW3, F1MFP1
    Related
    ENSBTAP00000060116.1, ENSBTAT00000069234.2

  6. XM_059876278.1 → XP_059732261.1  ATPase family gene 2 protein homolog A isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LSW3, F1MFP1

  7. XM_024977593.2 → XP_024833361.1  ATPase family gene 2 protein homolog A isoform X5

    UniProtKB/TrEMBL
    A0AAA9U0I1
    Related
    ENSBTAP00000103119.1, ENSBTAT00000099206.1
    Conserved Domains (2) summary
    smart01073
    Location:58 → 127
    CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
    cl27568
    Location:316 → 772
    TIP49; TIP49 C-terminus
Nucleotide Protein Strain
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