U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

calca calcitonin/calcitonin-related polypeptide, alpha [ Salmo salar (Atlantic salmon) ]

Gene ID: 100286641, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
calca
Gene description
calcitonin/calcitonin-related polypeptide, alpha
See related
Ensembl:ENSSSAG00000059372
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See calca in Genome Data Viewer
Location:
chromosome: ssa10
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (74702499..74707830, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (67011269..67016561, complement)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene Ethanolamine kinase 1 Neighboring gene protein inscuteable homolog Neighboring gene proteasome subunit alpha type-1 Neighboring gene protein RIC-3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcitonin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calcitonin gene-related peptide

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146580.1 → NP_001140052.1  calcitonin gene-related peptide precursor

    See identical proteins and their annotated locations for NP_001140052.1

    Status: PROVISIONAL

    Source sequence(s)
    BT057547
    UniProtKB/TrEMBL
    B9EPH2
    Conserved Domains (2) summary
    smart00113
    Location:83 → 125
    CALCITONIN; calcitonin
    pfam00214
    Location:1 → 126
    Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    74702499..74707830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045687178.1 → XP_045543134.1  calcitonin gene-related peptide isoform X3

    Conserved Domains (1) summary
    pfam00214
    Location:1 → 87
    Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family

  2. XM_014124090.2 → XP_013979565.1  calcitonin gene-related peptide isoform X2

    UniProtKB/TrEMBL
    A0A1S3KLS8
    Conserved Domains (2) summary
    smart00113
    Location:82 → 124
    CALCITONIN; calcitonin
    pfam00214
    Location:1 → 125
    Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family

  3. XM_014124089.2 → XP_013979564.1  calcitonin gene-related peptide isoform X1

    UniProtKB/TrEMBL
    A0A1S3KMJ8
    Related
    ENSSSAP00000167244.1, ENSSSAT00000192620.1
    Conserved Domains (1) summary
    pfam00214
    Location:1 → 121
    Calc_CGRP_IAPP; Calcitonin / CGRP / IAPP family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.