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LOC100244320 probable purple acid phosphatase 20 [ Vitis vinifera (wine grape) ]

Gene ID: 100244320, updated on 20-Nov-2023

Summary

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Gene symbol
LOC100244320
Gene description
probable purple acid phosphatase 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100244320 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (18635997..18643200, complement)
102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (17448914..17456122, complement)

Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene acyl carrier protein 2, mitochondrial Neighboring gene probable purple acid phosphatase 20 Neighboring gene purple acid phosphatase 22 Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable purple acid phosphatase 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

    Range
    18635997..18643200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010655768.3 → XP_010654070.1  probable purple acid phosphatase 20 isoform X2

    UniProtKB/TrEMBL
    A0A438EK81
    Conserved Domains (3) summary
    cd00839
    Location:83 → 365
    MPP_PAPs; purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain
    pfam00149
    Location:87 → 281
    Metallophos; Calcineurin-like phosphoesterase
    pfam16656
    Location:4 → 80
    Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain

  2. XM_002276877.4 → XP_002276913.1  probable purple acid phosphatase 20 isoform X1

    UniProtKB/TrEMBL
    A0A438JRW9, F6HKK0
    Conserved Domains (3) summary
    PLN02533
    Location:5 → 427
    PLN02533; probable purple acid phosphatase
    cd00839
    Location:137 → 419
    MPP_PAPs; purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain
    pfam16656
    Location:48 → 134
    Pur_ac_phosph_N; Purple acid Phosphatase, N-terminal domain
Nucleotide Protein
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