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MADS2 MADS-box protein 2 [ Vitis vinifera (wine grape) ]

Gene ID: 100232867, updated on 20-Nov-2023

Summary

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Gene symbol
MADS2
Gene description
MADS-box protein 2
Locus tag
VIT_00036551001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Also known as
VvSEP1; VvMADS2; VviSEP1
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Genomic context

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Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (23279350..23295735, complement)
102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (23363222..23379582, complement)

Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene ultraviolet-B receptor UVR8 Neighboring gene FUL-like protein Neighboring gene MYB-like transcription factor EOBII Neighboring gene uncharacterized LOC104881622 Neighboring gene microRNA MIR3632

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein MADS2
Names
Agamous-like MADS-box protein MADS2
SEPALLATA homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281180.1 → NP_001268109.1  agamous-like MADS-box protein MADS2

    See identical proteins and their annotated locations for NP_001268109.1

    Status: PROVISIONAL

    Source sequence(s)
    AF373601
    UniProtKB/TrEMBL
    Q8LLR2
    Conserved Domains (2) summary
    cd00265
    Location:2 → 76
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:89 → 173
    K-box; K-box region

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

    Range
    23279350..23295735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059742329.1 → XP_059598312.1  agamous-like MADS-box protein MADS2 isoform X2

  2. XM_059742328.1 → XP_059598311.1  agamous-like MADS-box protein MADS2 isoform X2

  3. XM_059742327.1 → XP_059598310.1  agamous-like MADS-box protein MADS2 isoform X1

    UniProtKB/Swiss-Prot
    A5BE01, D7SMN8, Q8LLR2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LLR2.2 GenPept UniProtKB/Swiss-Prot:Q8LLR2

Gene LinkOut

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Molecular Biology Databases