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LIMS1 LIM zinc finger domain containing 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100231377, updated on 13-Aug-2024

Summary

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Gene symbol
LIMS1
Gene description
LIM zinc finger domain containing 1
See related
Ensembl:ENSTGUG00000009631
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1 NC_044211.2 (87073762..87140662)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1 NC_044998.1 (87401597..87468583)

Chromosome 1 - NC_044211.2Genomic Context describing neighboring genes Neighboring gene sulfotransferase 1C1 Neighboring gene GRIP and coiled-coil domain containing 2 Neighboring gene E3 SUMO-protein ligase RanBP2 Neighboring gene coiled-coil domain containing 138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LIM and senescent cell antigen-like-containing domain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044211.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    87073762..87140662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030279304.3 → XP_030135164.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A674GI03
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  2. XM_041717793.1 → XP_041573727.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A674GI03
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  3. XM_030279297.3 → XP_030135157.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A674GI03
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  4. XM_030279300.3 → XP_030135160.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A674GI03
    Conserved Domains (5) summary
    cd09331
    Location:10 → 68
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:71 → 122
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:135 → 185
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:191 → 244
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:252 → 305
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  5. XM_030279289.3 → XP_030135149.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A674GI03, A0A674GYC2
    Related
    ENSTGUP00000027367.1
    Conserved Domains (5) summary
    cd09331
    Location:46 → 104
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:107 → 158
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:171 → 221
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:227 → 280
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:288 → 341
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  6. XM_030279282.3 → XP_030135142.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A674GI03
    Conserved Domains (5) summary
    cd09331
    Location:46 → 104
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:107 → 158
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:171 → 221
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:227 → 280
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:288 → 341
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  7. XM_012569573.4 → XP_012425027.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A674GI03
    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH

  8. XM_030279274.3 → XP_030135134.1  LIM and senescent cell antigen-like-containing domain protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674GI03, H0ZH77
    Related
    ENSTGUP00000009942.1
    Conserved Domains (5) summary
    cd09331
    Location:72 → 130
    LIM1_PINCH; The first LIM domain of protein PINCH
    cd09332
    Location:133 → 184
    LIM2_PINCH; The second LIM domain of protein PINCH
    cd09333
    Location:197 → 247
    LIM3_PINCH; The third LIM domain of protein PINCH
    cd09334
    Location:253 → 306
    LIM4_PINCH; The fourth LIM domain of protein PINCH
    cd09335
    Location:314 → 367
    LIM5_PINCH; The fifth LIM domain of protein PINCH
Nucleotide Protein
Heading Accession and Version

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