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SMYD1 SET and MYND domain containing 1 [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100230154, updated on 8-Mar-2024

Summary

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Gene symbol
SMYD1
Gene description
SET and MYND domain containing 1
See related
Ensembl:ENSTGUG00000010851
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See SMYD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 4 NC_044215.2 (5540894..5566077, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 4 NC_045002.1 (5376041..5401818, complement)

Chromosome 4 - NC_044215.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121469853 Neighboring gene fatty acid binding protein 1 Neighboring gene uncharacterized LOC115494876 Neighboring gene uncharacterized LOC115494875 Neighboring gene CD8 subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SMYD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044215.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    5540894..5566077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002187962.6 → XP_002187998.4  histone-lysine N-methyltransferase SMYD1 isoform X1

    UniProtKB/TrEMBL
    A0A674GQQ4, H0ZKS0
    Related
    ENSTGUP00000011191.1
    Conserved Domains (2) summary
    pfam01753
    Location:52 → 90
    zf-MYND; MYND finger
    cd10526
    Location:7 → 281
    SET_SMYD1; SET domain (including post-SET domain) found in SET and MYND domain-containing protein 1 (SMYD1) and similar proteins

  2. XM_002187930.6 → XP_002187966.4  histone-lysine N-methyltransferase SMYD1 isoform X2

    UniProtKB/TrEMBL
    A0A674HGZ3
    Related
    ENSTGUP00000033838.1
    Conserved Domains (2) summary
    pfam01753
    Location:52 → 90
    zf-MYND; MYND finger
    cd10526
    Location:7 → 268
    SET_SMYD1; SET domain (including post-SET domain) found in SET and MYND domain-containing protein 1 (SMYD1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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