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GOPC golgi associated PDZ and coiled-coil motif containing [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100225386, updated on 8-Mar-2024

Summary

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Gene symbol
GOPC
Gene description
golgi associated PDZ and coiled-coil motif containing
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
human mouse all
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Genomic context

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See GOPC in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 3 NC_044214.2 (48331751..48358017, complement)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 3 NC_045001.1 (47354498..47380734, complement)

Chromosome 3 - NC_044214.2Genomic Context describing neighboring genes Neighboring gene ROS proto-oncogene 1, receptor tyrosine kinase Neighboring gene discoidin, CUB and LCCL domain containing 1 Neighboring gene uncharacterized LOC121469705 Neighboring gene nephrocan Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of protein localization to cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated PDZ and coiled-coil motif-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044214.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    48331751..48358017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030267790.3 → XP_030123650.3  Golgi-associated PDZ and coiled-coil motif-containing protein isoform X2

    Conserved Domains (2) summary
    cd00992
    Location:276 → 358
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam10186
    Location:77 → 234
    Atg14; Vacuolar sorting 38 and autophagy-related subunit 14

  2. XM_002190234.6 → XP_002190270.3  Golgi-associated PDZ and coiled-coil motif-containing protein isoform X1

    Conserved Domains (2) summary
    cd00992
    Location:284 → 366
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    TIGR02169
    Location:32 → 274
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
Nucleotide Protein
Heading Accession and Version

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