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rest RE1 silencing transcription factor [ Takifugu rubripes (torafugu) ]

Gene ID: 100216471, updated on 21-Dec-2023

Summary

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Gene symbol
rest
Gene description
RE1 silencing transcription factor
See related
Ensembl:ENSTRUG00000020293
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Also known as
NRSF
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Genomic context

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See rest in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) Unplaced Scaffold NW_021821635.1 (412398..417853)
101 previous assembly FUGU5 (GCF_000180615.1) Unplaced Scaffold NW_004072931.1 (4268..9780)

NW_021821635.1Genomic Context describing neighboring genes Neighboring gene exosome complex component RRP40-like Neighboring gene beta-1,4-galactosyltransferase 1-like Neighboring gene nitric oxide-associated protein 1 Neighboring gene uncharacterized LOC115248447 Neighboring gene protein NipSnap homolog 3A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RE1-silencing transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142486.1 → NP_001135958.1  RE1-silencing transcription factor

    See identical proteins and their annotated locations for NP_001135958.1

    Status: PROVISIONAL

    Source sequence(s)
    EU306387
    UniProtKB/TrEMBL
    B7SJI6
    Related
    ENSTRUP00000075265.1, ENSTRUT00000074038.1
    Conserved Domains (4) summary
    PTZ00121
    Location:444 → 661
    PTZ00121; MAEBL; Provisional
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13909
    Location:312 → 336
    zf-H2C2_5; C2H2-type zinc-finger domain
    pfam13465
    Location:298 → 323
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NW_021821635.1 Reference fTakRub1.2 Primary Assembly

    Range
    412398..417853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029832122.1 → XP_029687982.1  RE1-silencing transcription factor isoform X1

    UniProtKB/TrEMBL
    A0A674NQM2
    Conserved Domains (4) summary
    sd00017
    Location:286 → 306
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam03154
    Location:473 → 793
    Atrophin-1; Atrophin-1 family
    pfam13465
    Location:298 → 323
    zf-H2C2_2; Zinc-finger double domain
    pfam13909
    Location:312 → 336
    zf-H2C2_5; C2H2-type zinc-finger domain
Nucleotide Protein
Heading Accession and Version

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