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LOC100196565 splicing factor 3b, subunit 3 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100196565, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100196565
Gene description
splicing factor 3b, subunit 3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC100196565 in Genome Data Viewer
Location:
chromosome: ssa16
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa16 NC_059457.1 (32093004..32094163)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa16 NC_027315.1 (31509634..31510791)

Chromosome ssa16 - NC_059457.1Genomic Context describing neighboring genes Neighboring gene alanine--tRNA ligase, cytoplasmic-like Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 Neighboring gene interleukin-34-like Neighboring gene E3 ubiquitin-protein ligase Siah1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001141594.2 → NP_001135066.1  splicing factor 3B subunit 3

    See identical proteins and their annotated locations for NP_001135066.1

    Status: PROVISIONAL

    Source sequence(s)
    BT050269
    UniProtKB/TrEMBL
    B5XGV0
    Conserved Domains (1) summary
    pfam10433
    Location:20 → 77
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059457.1 Reference Ssal_v3.1

    Range
    32093004..32094163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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