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aakb1 5-AMP-activated protein kinase subunit beta-1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100196330, updated on 30-Nov-2023

Summary

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Gene symbol
aakb1
Gene description
5-AMP-activated protein kinase subunit beta-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See aakb1 in Genome Data Viewer
Location:
chromosome: ssa24
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa24 NC_059465.1 (24256528..24259368)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa24 NC_027323.1 (23909515..23912328)

Chromosome ssa24 - NC_059465.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein Musashi homolog 1 Neighboring gene transmembrane protein 233 Neighboring gene phospholipase A2, minor isoenzyme Neighboring gene phospholipase A2 Neighboring gene asialoglycoprotein receptor-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleotide-activated protein kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5-AMP-activated protein kinase subunit beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001141359.1 → NP_001134831.1  5-AMP-activated protein kinase subunit beta-1

    See identical proteins and their annotated locations for NP_001134831.1

    Status: PROVISIONAL

    Source sequence(s)
    BT049276
    UniProtKB/TrEMBL
    B5XE07
    Conserved Domains (2) summary
    smart01010
    Location:184 → 273
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    pfam16561
    Location:81 → 162
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059465.1 Reference Ssal_v3.1

    Range
    24256528..24259368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014171383.2 → XP_014026858.1  5-AMP-activated protein kinase subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    B5XE07
    Conserved Domains (2) summary
    smart01010
    Location:184 → 273
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    pfam16561
    Location:81 → 162
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

  2. XM_014171386.2 → XP_014026861.1  5-AMP-activated protein kinase subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    B5XE07
    Conserved Domains (2) summary
    smart01010
    Location:184 → 273
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    pfam16561
    Location:81 → 162
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

  3. XM_014171385.2 → XP_014026860.1  5-AMP-activated protein kinase subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    B5XE07
    Conserved Domains (2) summary
    smart01010
    Location:184 → 273
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    pfam16561
    Location:81 → 162
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase

  4. XM_014171387.2 → XP_014026862.1  5-AMP-activated protein kinase subunit beta-1 isoform X1

    UniProtKB/TrEMBL
    B5XE07
    Conserved Domains (2) summary
    smart01010
    Location:184 → 273
    AMPKBI; 5'-AMP-activated protein kinase beta subunit, interation domain
    pfam16561
    Location:81 → 162
    AMPK1_CBM; Glycogen recognition site of AMP-activated protein kinase
Nucleotide Protein
Heading Accession and Version

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