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crb12 Beta-crystallin A1-2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195581, updated on 30-Nov-2023

Summary

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Gene symbol
crb12
Gene description
Beta-crystallin A1-2
See related
Ensembl:ENSSSAG00000054725
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa20
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (62039238..62043292)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (56033502..56037404)

Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene protein unc-119 homolog A Neighboring gene beta-crystallin B1-like Neighboring gene carboxypeptidase D-like Neighboring gene golgi SNAP receptor complex member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of eye lens IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lens development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Beta-crystallin A1-2; beta-crystallin A1-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140610.2 → NP_001134082.1  Beta-crystallin A1-2

    See identical proteins and their annotated locations for NP_001134082.1

    Status: PROVISIONAL

    Source sequence(s)
    BT046358
    UniProtKB/TrEMBL
    B5X5N9
    Related
    ENSSSAP00000077986.2, ENSSSAT00000111524.2
    Conserved Domains (2) summary
    smart00247
    Location:106 → 194
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:13 → 97
    Crystall; Beta/Gamma crystallin

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059461.1 Reference Ssal_v3.1

    Range
    62039238..62043292
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014162683.2 → XP_014018158.1  beta-crystallin A1-2 isoform X1

    UniProtKB/TrEMBL
    B5X5N9
    Conserved Domains (2) summary
    smart00247
    Location:106 → 194
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:13 → 97
    Crystall; Beta/Gamma crystallin

  2. XM_014162684.2 → XP_014018159.1  beta-crystallin A1-2 isoform X1

    UniProtKB/TrEMBL
    B5X5N9
    Conserved Domains (2) summary
    smart00247
    Location:106 → 194
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:13 → 97
    Crystall; Beta/Gamma crystallin
Nucleotide Protein
Heading Accession and Version

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