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sde2 SDE2 telomere maintenance homolog (S. pombe) [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195282, updated on 30-Nov-2023

Summary

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Gene symbol
sde2
Gene description
SDE2 telomere maintenance homolog (S. pombe)
See related
Ensembl:ENSSSAG00000038289
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
ca055
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Genomic context

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Location:
chromosome: ssa12
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (38694891..38705945)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (31137358..31149507, complement)

Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene calpain-1 catalytic subunit-like Neighboring gene 28S ribosomal protein S28, mitochondrial-like Neighboring gene uncharacterized LOC123725479 Neighboring gene mitochondrial ribosomal protein S28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication stress response regulator SDE2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140311.1 → NP_001133783.1  replication stress response regulator SDE2

    See identical proteins and their annotated locations for NP_001133783.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045631
    UniProtKB/TrEMBL
    A0A1S3L882, B5X3L2
    Related
    ENSSSAP00000029099.2, ENSSSAT00000053930.2
    Conserved Domains (2) summary
    pfam13297
    Location:335 → 394
    Telomere_Sde2_2; Telomere stability C-terminal
    cl00155
    Location:63 → 140
    UBQ; Ubiquitin-like proteins

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059453.1 Reference Ssal_v3.1

    Range
    38694891..38705945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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