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lgals8a galectin 8a [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195277, updated on 8-Mar-2024

Summary

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Gene symbol
lgals8a
Gene description
galectin 8a
See related
Ensembl:ENSSSAG00000112692
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
leg8; lgals8
Orthologs
zebrafish all
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Genomic context

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See lgals8a in Genome Data Viewer
Location:
chromosome: ssa06
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (55993762..56002278)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (51013818..51022644)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene ribonucleoside-diphosphate reductase subunit M2 Neighboring gene small nucleolar RNA SNORD94 Neighboring gene small nucleolar RNA SNORD94 Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene transmembrane protein 242

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-8
Names
galectin 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140306.1 → NP_001133778.1  galectin-8

    See identical proteins and their annotated locations for NP_001133778.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045622
    UniProtKB/TrEMBL
    B5X3K3
    Related
    ENSSSAP00000151297.1, ENSSSAT00000216527.1
    Conserved Domains (1) summary
    smart00908
    Location:23 → 147
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    55993762..56002278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014204706.2 → XP_014060181.1  galectin-8 isoform X3

    UniProtKB/TrEMBL
    A0A1S3S766
    Conserved Domains (1) summary
    smart00908
    Location:23 → 147
    Gal-bind_lectin; Galactoside-binding lectin

  2. XM_014204705.2 → XP_014060180.1  galectin-8 isoform X2

    UniProtKB/TrEMBL
    A0A1S3S759
    Conserved Domains (1) summary
    smart00908
    Location:52 → 176
    Gal-bind_lectin; Galactoside-binding lectin

  3. XM_014204703.2 → XP_014060178.1  galectin-8 isoform X1

    UniProtKB/TrEMBL
    A0A1S3S764
    Related
    ENSSSAP00000168594.1, ENSSSAT00000180808.1
    Conserved Domains (1) summary
    smart00908
    Location:52 → 176
    Gal-bind_lectin; Galactoside-binding lectin
Nucleotide Protein
Heading Accession and Version

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