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s61a1 transport protein Sec61 subunit alpha [ Salmo salar (Atlantic salmon) ]

Gene ID: 100195187, updated on 30-Nov-2023

Summary

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Gene symbol
s61a1
Gene description
transport protein Sec61 subunit alpha
See related
Ensembl:ENSSSAG00000080810
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See s61a1 in Genome Data Viewer
Location:
chromosome: ssa12
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (77411241..77420239, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (69074214..69083220, complement)

Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene netrin-4-like Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 4a Neighboring gene uncharacterized LOC106565808 Neighboring gene inositol hexakisphosphate kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signal sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in post-translational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Sec61 translocon complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transport protein Sec61 subunit alpha
Names
Sec61 alpha form A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001140216.1 → NP_001133688.1  transport protein Sec61 subunit alpha

    See identical proteins and their annotated locations for NP_001133688.1

    Status: PROVISIONAL

    Source sequence(s)
    BT045441
    UniProtKB/TrEMBL
    B5X322
    Related
    ENSSSAP00000118539.1, ENSSSAT00000153809.2
    Conserved Domains (1) summary
    PTZ00219
    Location:1 → 471
    PTZ00219; Sec61 alpha subunit; Provisional

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059453.1 Reference Ssal_v3.1

    Range
    77411241..77420239 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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