tgfi1 Transforming growth factor beta-1-induced transcript 1 protein [Salmo salar (Atlantic salmon)] - Gene

Summary

Gene symbol: tgfi1
Gene description: Transforming growth factor beta-1-induced transcript 1 protein
See related: Ensembl:ENSSSAG00000006235
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Salmo salar
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

Location:: chromosome: ssa19

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
102	current	Ssal_v3.1 (GCF_905237065.1)	ssa19	NC_059460.1 (64126142..64155330)
100	previous assembly	ICSASG_v2 (GCF_000233375.1)	ssa19	NC_027318.1 (60295118..60324669)

Chromosome ssa19 - NC_059460.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info	PubMed
enables muscle alpha-actinin binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in actin cytoskeleton organization	IEA Inferred from Electronic Annotation more info	PubMed
involved_in muscle structure development	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in Z disc	IEA Inferred from Electronic Annotation more info	PubMed
located_in adherens junction	IEA Inferred from Electronic Annotation more info	PubMed
part_of filamentous actin	IEA Inferred from Electronic Annotation more info	PubMed
located_in stress fiber	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: transforming growth factor beta-1-induced transcript 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001139971.1 → NP_001133443.1 transforming growth factor beta-1-induced transcript 1 protein

See identical proteins and their annotated locations for NP_001133443.1

Status: PROVISIONAL

Source sequence(s)

BT044983

UniProtKB/TrEMBL

B5X1R4

Conserved Domains (5) summary

cd09339
Location:446 → 497

LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family

cd09409
Location:387 → 439

LIM3_Paxillin; The third LIM domain of paxillin

cd09336
Location:269 → 321

LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family

pfam03535
Location:43 → 164

Paxillin; Paxillin family

cl02475
Location:328 → 379

LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

NC_059460.1 Reference Ssal_v3.1

Range

64126142..64155330

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_014158489.2 → XP_014013964.1 transforming growth factor beta-1-induced transcript 1 protein isoform X1

UniProtKB/TrEMBL

A0A1S3NEU8

Related

ENSSSAP00000012586.1, ENSSSAT00000013409.2

Conserved Domains (6) summary

cd09339
Location:463 → 514

LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family

cd09409
Location:404 → 456

LIM3_Paxillin; The third LIM domain of paxillin

cd09336
Location:286 → 338

LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family

pfam03535
Location:60 → 140

Paxillin; Paxillin family

pfam06679
Location:9 → 108

DUF1180; Protein of unknown function (DUF1180)

cl02475
Location:345 → 396

LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
XM_014158490.2 → XP_014013965.1 transforming growth factor beta-1-induced transcript 1 protein isoform X2

UniProtKB/TrEMBL

A0A1S3NFE3

Conserved Domains (6) summary

cd09339
Location:432 → 483

LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family

cd09409
Location:373 → 425

LIM3_Paxillin; The third LIM domain of paxillin

cd09336
Location:255 → 307

LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family

pfam03535
Location:60 → 211

Paxillin; Paxillin family

pfam06679
Location:9 → 108

DUF1180; Protein of unknown function (DUF1180)

cl02475
Location:314 → 365

LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers