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etv6 ets variant gene 6 (TEL oncogene) [ Salmo salar (Atlantic salmon) ]

Gene ID: 100194933, updated on 30-Nov-2023

Summary

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Gene symbol
etv6
Gene description
ets variant gene 6 (TEL oncogene)
See related
Ensembl:ENSSSAG00000002504
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa07
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa07 NC_059448.1 (45788369..45809140, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa07 NC_027306.1 (42182232..42201011, complement)

Chromosome ssa07 - NC_059448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123743780 Neighboring gene monocarboxylate transporter 2-like Neighboring gene uncharacterized LOC106609476 Neighboring gene protein mono-ADP-ribosyltransferase PARP12 Neighboring gene ubl carboxyl-terminal hydrolase 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor ETV6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139962.1 → NP_001133434.1  transcription factor ETV6

    See identical proteins and their annotated locations for NP_001133434.1

    Status: PROVISIONAL

    Source sequence(s)
    BT044963
    UniProtKB/TrEMBL
    B5X1P4
    Related
    ENSSSAP00000043333.2, ENSSSAT00000069958.2
    Conserved Domains (2) summary
    cd08535
    Location:57 → 124
    SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
    smart00413
    Location:353 → 439
    ETS; erythroblast transformation specific domain

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059448.1 Reference Ssal_v3.1

    Range
    45788369..45809140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014208155.2 → XP_014063630.1  transcription factor ETV6 isoform X1

    UniProtKB/TrEMBL
    A0A1S3SH21
    Related
    ENSSSAP00000178016.1, ENSSSAT00000214871.1
    Conserved Domains (2) summary
    cd08535
    Location:56 → 123
    SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
    smart00413
    Location:352 → 438
    ETS; erythroblast transformation specific domain

  2. XM_014208157.2 → XP_014063632.1  transcription factor ETV6 isoform X3

    UniProtKB/TrEMBL
    A0A1S3SH17
    Related
    ENSSSAP00000004975.2, ENSSSAT00000005329.2
    Conserved Domains (2) summary
    cd08535
    Location:46 → 113
    SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
    smart00413
    Location:342 → 428
    ETS; erythroblast transformation specific domain

  3. XM_014208156.2 → XP_014063631.1  transcription factor ETV6 isoform X2

    UniProtKB/TrEMBL
    A0A1S3SH13
    Related
    ENSSSAP00000162979.1, ENSSSAT00000233546.1
    Conserved Domains (2) summary
    cd08535
    Location:47 → 114
    SAM_PNT-Tel_Yan; Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein
    smart00413
    Location:343 → 429
    ETS; erythroblast transformation specific domain

  4. XM_014208158.2 → XP_014063633.1  transcription factor ETV6 isoform X4

    UniProtKB/TrEMBL
    A0A1S3SH16
    Conserved Domains (2) summary
    smart00413
    Location:264 → 350
    ETS; erythroblast transformation specific domain
    cl15755
    Location:1 → 35
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein
Heading Accession and Version

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