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LOC100194508 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) [ Salmo salar (Atlantic salmon) ]

Gene ID: 100194508, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100194508
Gene description
ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)
See related
Ensembl:ENSSSAG00000079061
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC100194508 in Genome Data Viewer
Location:
chromosome: ssa05
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (37239281..37261597, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa05 NC_027304.1 (34585714..34609413, complement)

Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase theta Neighboring gene nuclear factor NF-kappa-B p105 subunit Neighboring gene PRP19/PSO4 homolog (S. cerevisiae) Neighboring gene V-type proton ATPase 116 kDa subunit a3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar). Andreassen R, et al. BMC Genomics, 2009 Oct 30. PMID 19878547, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 D3
Names
Ubiquitin-conjugating enzyme E2 D2
NP_001133066.1
XP_014054871.1
XP_014054873.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001139594.1 → NP_001133066.1  ubiquitin-conjugating enzyme E2 D3

    See identical proteins and their annotated locations for NP_001133066.1

    Status: PROVISIONAL

    Source sequence(s)
    BT043509
    UniProtKB/TrEMBL
    B5DFV0
    Related
    ENSSSAP00000113405.1, ENSSSAT00000148449.2
    Conserved Domains (1) summary
    cl00154
    Location:1 → 146
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059446.1 Reference Ssal_v3.1

    Range
    37239281..37261597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014199396.2 → XP_014054871.1  ubiquitin-conjugating enzyme E2 D3 isoform X1

    UniProtKB/TrEMBL
    B9EN06
    Related
    ENSSSAP00000086254.2, ENSSSAT00000120138.2
    Conserved Domains (1) summary
    cl00154
    Location:1 → 146
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

  2. XM_014199398.2 → XP_014054873.1  ubiquitin-conjugating enzyme E2 D3 isoform X2

    UniProtKB/TrEMBL
    A0A1S3RRI7
    Conserved Domains (2) summary
    COG5078
    Location:6 → 145
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cl00154
    Location:4 → 144
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
Nucleotide Protein
Heading Accession and Version

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