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LOC100187178 myosin regulatory light chain 12A [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100187178, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100187178
Gene description
myosin regulatory light chain 12A
See related
Ensembl:ENSCING00000024490
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100187178 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 11 NC_020176.2 (1527819..1529314, complement)

Chromosome 11 - NC_020176.2Genomic Context describing neighboring genes Neighboring gene gamma-butyrobetaine dioxygenase Neighboring gene nidogen-2-like Neighboring gene myosin-10 Neighboring gene apoptotic chromatin condensation inducer in the nucleus Neighboring gene uncharacterized LOC100179383

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020176.2 Chromosome 11 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myosin regulatory light chain 12A
Names
myosin regulatory light chain 12B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020176.2 Reference KH Primary Assembly

    Range
    1527819..1529314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002123773.4 → XP_002123809.1  myosin regulatory light chain 12A

    UniProtKB/TrEMBL
    A0A1W2W434, H2XZJ2
    Related
    ENSCINP00000035076
    Conserved Domains (3) summary
    COG5126
    Location:12 → 169
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:32 → 89
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl08302
    Location:102 → 164
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
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