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LOC100185231 RAB6A-GEF complex partner protein 2 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100185231, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100185231
Gene description
RAB6A-GEF complex partner protein 2
See related
Ensembl:ENSCING00000007998
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100185231 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 4 NC_020169.2 (1246465..1250873, complement)

Chromosome 4 - NC_020169.2Genomic Context describing neighboring genes Neighboring gene melatonin receptor type 1B-B-like Neighboring gene prostate-associated microseminoprotein-like Neighboring gene E3 ubiquitin-protein ligase SMURF2 Neighboring gene translocon-associated protein subunit alpha Neighboring gene ADP-ribosylation factor-binding protein GGA1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020169.2 Chromosome 4 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of Ric1-Rgp1 guanyl-nucleotide exchange factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAB6A-GEF complex partner protein 2
Names
retrograde Golgi transport protein RGP1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020169.2 Reference KH Primary Assembly

    Range
    1246465..1250873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009859968.3 → XP_009858270.1  RAB6A-GEF complex partner protein 2

    See identical proteins and their annotated locations for XP_009858270.1

    UniProtKB/TrEMBL
    A0A1W3JNK5, F6VI10
    Conserved Domains (1) summary
    pfam08737
    Location:95 → 326
    Rgp1; Rgp1
Nucleotide Protein
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