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kcnq4/5 voltage gated potassium channel subunit [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100182644, updated on 21-Dec-2023

Summary

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Gene symbol
kcnq4/5
Gene description
voltage gated potassium channel subunit
See related
Ensembl:ENSCING00000011369
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See kcnq4/5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 2 NC_020167.2 (6592570..6615735, complement)

Chromosome 2 - NC_020167.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113474043 Neighboring gene sodium-coupled monocarboxylate transporter 2-like Neighboring gene coiled-coil domain-containing protein 34 Neighboring gene lysine-specific histone demethylase 1B Neighboring gene putative E3 ubiquitin-protein ligase UBR7 Neighboring gene serine/arginine-rich splicing factor 5 pseudogene Neighboring gene uncharacterized LOC104265416 Neighboring gene tyrosine 3-monooxygenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020167.2 Chromosome 2 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ion channel clustering at the axon initial segment and node of Ranvier evolved sequentially in early chordates. Hill AS, et al. PLoS Genet, 2008 Dec. PMID 19112491, Free PMC Article
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage gated potassium channel subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145558.1 → NP_001139030.1  voltage gated potassium channel subunit

    See identical proteins and their annotated locations for NP_001139030.1

    Status: PROVISIONAL

    Source sequence(s)
    FJ461778
    UniProtKB/TrEMBL
    A0A1W2VUS7, C0JSV8, C0JSV9
    Related
    ENSCINP00000021750, ENSCINT00000021996
    Conserved Domains (3) summary
    pfam00520
    Location:177 → 386
    Ion_trans; Ion transport protein
    pfam03520
    Location:499 → 653
    KCNQ_channel; KCNQ voltage-gated potassium channel
    pfam07885
    Location:301 → 376
    Ion_trans_2; Ion channel

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020167.2 Reference KH Primary Assembly

    Range
    6592570..6615735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials