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LOC100178567 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100178567, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100178567
Gene description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit
See related
Ensembl:ENSCING00000005044
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100178567 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 3 NC_020168.2 (1082327..1087003, complement)

Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene Numb protein Neighboring gene integral membrane protein GPR137B-like Neighboring gene uncharacterized LOC100176248 Neighboring gene sodium-coupled neutral amino acid transporter 2 Neighboring gene uncharacterized LOC113474084 Neighboring gene transcription factor protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020168.2 Chromosome 3 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020168.2 Reference KH Primary Assembly

    Range
    1082327..1087003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002124533.5 → XP_002124569.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit

    UniProtKB/TrEMBL
    A0A1W2W936, F6SM47
    Related
    ENSCINP00000010399
    Conserved Domains (1) summary
    pfam03345
    Location:26 → 436
    DDOST_48kD; Oligosaccharyltransferase 48 kDa subunit beta
Nucleotide Protein
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