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LOC100177402 geranylgeranyl transferase type-2 subunit beta [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100177402, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100177402
Gene description
geranylgeranyl transferase type-2 subunit beta
See related
Ensembl:ENSCING00000006632
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100177402 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 9 NC_020174.2 (6178178..6182045)

Chromosome 9 - NC_020174.2Genomic Context describing neighboring genes Neighboring gene CDK5 and ABL1 enzyme substrate 2 Neighboring gene epsin-2 Neighboring gene MORN repeat-containing protein 5-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 Neighboring gene alkaline phosphatase-like Neighboring gene protein RRNAD1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020174.2 Chromosome 9 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Rab geranylgeranyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein geranylgeranylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Rab-protein geranylgeranyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
geranylgeranyl transferase type-2 subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020174.2 Reference KH Primary Assembly

    Range
    6178178..6182045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002130443.4 → XP_002130479.1  geranylgeranyl transferase type-2 subunit beta

    UniProtKB/TrEMBL
    A0A1W2WK61, F6U1E2
    Related
    ENSCINP00000013619
    Conserved Domains (2) summary
    PLN03201
    Location:17 → 328
    PLN03201; RAB geranylgeranyl transferase beta-subunit; Provisional
    cd02894
    Location:18 → 304
    GGTase-II; Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying ...
Nucleotide Protein
Heading Accession and Version

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