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LOC100176459 protein KRI1 homolog [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100176459, updated on 21-Dec-2023

Summary

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Gene symbol
LOC100176459
Gene description
protein KRI1 homolog
See related
Ensembl:ENSCING00000004801
Gene type
protein coding
RefSeq status
MODEL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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Genomic context

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See LOC100176459 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 8 NC_020173.2 (612238..620005, complement)

Chromosome 8 - NC_020173.2Genomic Context describing neighboring genes Neighboring gene AP-1 complex-associated regulatory protein Neighboring gene uncharacterized LOC100179634 Neighboring gene putative elongator complex protein 1 Neighboring gene tubulin-specific chaperone A-like Neighboring gene uncharacterized LOC100182773

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020173.2 Chromosome 8 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein KRI1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020173.2 Reference KH Primary Assembly

    Range
    612238..620005 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002124544.4 → XP_002124580.1  protein KRI1 homolog

    UniProtKB/TrEMBL
    A0A1W2WC72, F6REI3
    Related
    ENSCINP00000009931
    Conserved Domains (2) summary
    pfam05178
    Location:293 → 376
    Kri1; KRI1-like family
    pfam12936
    Location:458 → 543
    Kri1_C; KRI1-like family C-terminal
Nucleotide Protein
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