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TFAM transcription factor A, mitochondrial [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100171618, updated on 26-Mar-2024

Summary

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Gene symbol
TFAM
Gene description
transcription factor A, mitochondrial
Locus tag
CR201_G0008352
See related
Ensembl:ENSPPYG00000039039
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 8 NC_071993.2 (85863568..85877367, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 10 NC_071995.1 (82026816..82040615, complement)

Chromosome 8 - NC_071993.2Genomic Context describing neighboring genes Neighboring gene BicC family RNA binding protein 1 Neighboring gene uncharacterized LOC129048292 Neighboring gene uncharacterized LOC129048293 Neighboring gene ubiquitin conjugating enzyme E2 D1 Neighboring gene CDGSH iron sulfur domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • DKFZp469D2116

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription initiation at mitochondrial promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor A, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131295.1 → NP_001124767.1  transcription factor A, mitochondrial

    See identical proteins and their annotated locations for NP_001124767.1

    Status: PROVISIONAL

    Source sequence(s)
    CR857400
    UniProtKB/TrEMBL
    A0A2J8WQV1, H2NAU8, Q5REW5
    Related
    ENSPPYP00000028261.1, ENSPPYT00000061499.1
    Conserved Domains (2) summary
    cd01390
    Location:193 → 254
    HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...
    pfam00505
    Location:88 → 155
    HMG_box; HMG (high mobility group) box

RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071993.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    85863568..85877367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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