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btbd1 BTB (POZ) domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100170424, updated on 8-Mar-2024

Summary

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Official Symbol
btbd1provided by Xenbase
Official Full Name
BTB (POZ) domain containing 1provided by Xenbase
Primary source
Xenbase:XB-GENE-969035
See related
Ensembl:ENSXETG00000016087
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ns5atp8
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (105415377..105454883, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (95461805..95506436, complement)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene homer scaffold protein 2 Neighboring gene chromosome 3 C15orf40 homolog Neighboring gene RNA guanine-7 methyltransferase activating subunit Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene HDGF like 3 Neighboring gene basonuclin zinc finger protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in neurogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
BTB/POZ domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130202.1 → NP_001123674.1  BTB/POZ domain-containing protein 1

    See identical proteins and their annotated locations for NP_001123674.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166965
    UniProtKB/TrEMBL
    B2RYZ8, L7N3Z9
    Related
    ENSXETP00000098680.1, ENSXETT00000079855.2
    Conserved Domains (2) summary
    smart00875
    Location:39 → 138
    BACK; BTB And C-terminal Kelch
    pfam08005
    Location:186 → 332
    PHR; PHR domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    105415377..105454883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897678.1 → XP_031753538.1  BTB/POZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QCX9, F6TYK0
    Related
    ENSXETP00000035085.5, ENSXETT00000035085.5
    Conserved Domains (3) summary
    cd18281
    Location:51 → 177
    BTB_POZ_BTBD1_2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing proteins, BTBD1 and BTBD2
    pfam08005
    Location:332 → 479
    PHR; PHR domain
    cl28903
    Location:173 → 279
    BACK; BACK (BTB and C-terminal Kelch) domain

  2. XM_018091949.2 → XP_017947438.1  BTB/POZ domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QCX9, F6TYK0
    Related
    ENSXETP00000066394.2, ENSXETT00000085615.2
    Conserved Domains (3) summary
    cd18281
    Location:51 → 177
    BTB_POZ_BTBD1_2; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing proteins, BTBD1 and BTBD2
    pfam08005
    Location:332 → 479
    PHR; PHR domain
    cl28903
    Location:173 → 279
    BACK; BACK (BTB and C-terminal Kelch) domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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