U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zf(traf/ring)-2 zinc finger protein (TRAF/RING)-2 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100169997, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
zf(traf/ring)-2
Gene description
zinc finger protein (TRAF/RING)-2
See related
Ensembl:ENSCING00000004316
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
Ci-ZF(TRAF/RING)-2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zf(traf/ring)-2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 4 NC_020169.2 (1603330..1614230, complement)

Chromosome 4 - NC_020169.2Genomic Context describing neighboring genes Neighboring gene sodium/iodide cotransporter-like Neighboring gene sodium-coupled monocarboxylate transporter 1-like Neighboring gene lysophospholipase D GDPD1-like Neighboring gene beta-hexosaminidase subunit alpha Neighboring gene beta-hexosaminidase subunit alpha-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_020169.2 Chromosome 4 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of NF-kappaB-inducing kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein (TRAF/RING)-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001129866.1 → NP_001123338.1  zinc finger protein (TRAF/RING)-2

    See identical proteins and their annotated locations for NP_001123338.1

    Status: PROVISIONAL

    Source sequence(s)
    BR000084
    UniProtKB/TrEMBL
    A0A1W2VU55, F6SH31, Q1RLF0
    Related
    ENSCINP00000008928, ENSCINT00000008928
    Conserved Domains (3) summary
    cd00162
    Location:17 → 56
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd03781
    Location:308 → 461
    MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
    pfam02176
    Location:210 → 269
    zf-TRAF; TRAF-type zinc finger

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020169.2 Reference KH Primary Assembly

    Range
    1603330..1614230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials