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zf(cchc)-12 zinc finger protein (CCHC)-12 [ Ciona intestinalis (vase tunicate) ]

Gene ID: 100169996, updated on 21-Dec-2023

Summary

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Gene symbol
zf(cchc)-12
Gene description
zinc finger protein (CCHC)-12
See related
Ensembl:ENSCING00000008595
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
Also known as
Ci-ZF(CCHC)-12
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Genomic context

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Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 7 NC_020172.2 (6080510..6086345)

Chromosome 7 - NC_020172.2Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase G Neighboring gene UPF0449 protein C19orf25 homolog Neighboring gene sperm-associated antigen 16 protein Neighboring gene ankyrin repeat and SOCS box protein 2-like Neighboring gene dynein heavy chain 6, axonemal Neighboring gene transfer RNA proline (anticodon UGG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020172.2 Chromosome 7 Reference KH Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic analysis of embryonic expression profiles of zinc finger genes in Ciona intestinalis. Miwata K, et al. Dev Biol, 2006 Apr 15. PMID 16519883
  2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein (CCHC)-12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001129865.1 → NP_001123337.1  zinc finger protein (CCHC)-12

    See identical proteins and their annotated locations for NP_001123337.1

    Status: PROVISIONAL

    Source sequence(s)
    BR000099
    UniProtKB/TrEMBL
    A0A1W2VPV9, F6UCZ3, Q1RLD5
    Related
    ENSCINP00000017527, ENSCINT00000017527
    Conserved Domains (1) summary
    pfam11708
    Location:165 → 415
    Slu7; Pre-mRNA splicing Prp18-interacting factor

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020172.2 Reference KH Primary Assembly

    Range
    6080510..6086345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009860594.3 → XP_009858896.1  zinc finger protein (CCHC)-12 isoform X1

    UniProtKB/TrEMBL
    A0A1W3JP54
    Conserved Domains (1) summary
    pfam11708
    Location:165 → 415
    Slu7; Pre-mRNA splicing Prp18-interacting factor
Nucleotide Protein
Heading Accession and Version

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