PATR-F major histocompatibility complex, class I, F [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: PATR-F
Gene description: major histocompatibility complex, class I, F
Locus tag: CK820_G0006688
See related: Ensembl:ENSPTRG00000017910
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as: MHC-F
Annotation information: Annotation category: partial on reference assembly
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Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	5	NC_072403.2 (35654302..35662600)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	6	NC_072404.1 (35654309..35662607)

Chromosome 5 - NC_072403.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables peptide antigen binding	IEA Inferred from Electronic Annotation more info	PubMed
enables signaling receptor binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent	IEA Inferred from Electronic Annotation more info	PubMed
involved_in antigen processing and presentation of endogenous peptide antigen via MHC class Ib	IEA Inferred from Electronic Annotation more info	PubMed
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of T cell mediated cytotoxicity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in external side of plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: patr class I histocompatibility antigen, CH28 alpha chain

Names: CHLA class I histocompatibility antigen, CH28 alpha chain; MHC class I antigen; MHC class I protein; major histocompatibility complex, class I, A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001129198.1 → NP_001122670.1 patr class I histocompatibility antigen, CH28 alpha chain precursor

See identical proteins and their annotated locations for NP_001122670.1

Status: PROVISIONAL

Source sequence(s)

AF084028

UniProtKB/Swiss-Prot

P16215

UniProtKB/TrEMBL

A0A2J8NX10, A0A6D2YBK5, H2QSL7, Q3C171

Related

ENSPTRP00000030544.6, ENSPTRT00000033063.6

Conserved Domains (2) summary

cd07698
Location:204 → 296

IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

pfam00129
Location:22 → 200

MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2