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SelR methionine sulfoxide reductase SelR [ Acyrthosiphon pisum (pea aphid) ]

Gene ID: 100166392, updated on 23-May-2024

Summary

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Gene symbol
SelR
Gene description
methionine sulfoxide reductase SelR
See related
APHIDBASE:ACYPI007268; EnsemblRapid:GeneID_100166392
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Acyrthosiphon pisum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Acyrthosiphon
Also known as
Msrb3
Orthologs
fruit fly all
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Genomic context

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See SelR in Genome Data Viewer
Location:
chromosome: A1
Exon count:
4
Annotation release Status Assembly Chr Location
103 current pea_aphid_22Mar2018_4r6ur (GCF_005508785.1) A1 NC_042494.1 (150012414..150014755)
102 previous assembly Acyr_2.0 (GCF_000142985.2) Unplaced Scaffold NW_003383490.1 (1004616..1006957, complement)

Chromosome A1 - NC_042494.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100163901 Neighboring gene uncharacterized LOC103308725 Neighboring gene E3 ubiquitin-protein ligase ctrip Neighboring gene galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase I Neighboring gene dim gamma-tubulin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-methionine (R)-S-oxide reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methionine sulfoxide reductase B3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162447.1 → NP_001155919.1  methionine sulfoxide reductase B3 isoform 1

    See identical proteins and their annotated locations for NP_001155919.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK343152, AK343153
    UniProtKB/TrEMBL
    C4WYE8, J9K3A3
    Related
    NP_001155919.1, NM_001162447.1
    Conserved Domains (1) summary
    PRK00222
    Location:38 → 176
    PRK00222; methionine sulfoxide reductase B; Provisional

  2. NM_001162448.1 → NP_001155920.1  methionine sulfoxide reductase B3 isoform 2

    See identical proteins and their annotated locations for NP_001155920.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    AK343152, AK343153
    UniProtKB/TrEMBL
    C4WYE9
    Related
    NP_001155920.1, NM_001162448.1
    Conserved Domains (1) summary
    PRK00222
    Location:38 → 164
    PRK00222; methionine sulfoxide reductase B; Provisional

RefSeqs of Annotated Genomes: Acyrthosiphon pisum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

Genomic

  1. NC_042494.1 Reference pea_aphid_22Mar2018_4r6ur Primary Assembly

    Range
    150012414..150014755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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