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nlrc3 NLR family, CARD domain containing 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100158644, updated on 25-Apr-2024

Summary

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Official Symbol
nlrc3provided by Xenbase
Official Full Name
NLR family, CARD domain containing 3provided by Xenbase
Primary source
Xenbase:XB-GENE-981781
See related
Ensembl:ENSXETG00000032463
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (20696415..20711264)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (14831468..14845290)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene TNF receptor-associated protein 1 Neighboring gene SLX4 structure-specific endonuclease subunit Neighboring gene clusterin associated protein 1 Neighboring gene glucagon receptor Neighboring gene ankyrin repeat and sterile alpha motif domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within innate immune response IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in lateral plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NLR family CARD domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    20696415..20711264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018097257.2 → XP_017952746.1  NLR family CARD domain-containing protein 3

    UniProtKB/TrEMBL
    F6PQZ8, F6Z855
    Related
    ENSXETP00000009195.4, ENSXETT00000009195.4
Nucleotide Protein Strain
Heading Accession and Version

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