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srek1ip1.S SREK1-interacting protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100158386, updated on 7-Sep-2023

Summary

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Official Symbol
srek1ip1.S
Official Full Name
SREK1-interacting protein 1 S homeolog
Primary source
Xenbase:XB-GENE-6252920
See related
EnsemblRapid:ENSXLAG00005005284
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
p18srp; srek1ip1; sfrs12ip1; srek1ip1.L
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Genomic context

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See srek1ip1.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (176761074..176789674)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694844.1 (816157..844700, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene protein FAM135A-like Neighboring gene CWC27 spliceosome-associated protein S homeolog Neighboring gene shisa like 2B S homeolog Neighboring gene regulator of G-protein signaling 7 binding protein S homeolog Neighboring gene ring finger protein 180 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SREK1-interacting protein 1 S homeolog
Names
SFRS12-interacting protein 1
SREK1-interacting protein 1 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127830.1 → NP_001121302.1  SREK1-interacting protein 1 S homeolog

    See identical proteins and their annotated locations for NP_001121302.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124954
    UniProtKB/TrEMBL
    Q08AY4
    Related
    ENSXLAP00005015598.1, ENSXLAT00005015884.1
    Conserved Domains (1) summary
    pfam13917
    Location:9 → 30
    zf-CCHC_3; Zinc knuckle

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    176761074..176789674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018241528.2 → XP_018097017.1  SREK1-interacting protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0U5K1
    Related
    ENSXLAP00005015584.1, ENSXLAT00005015870.1
Nucleotide Protein Strain
Heading Accession and Version

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