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ATL1 atlastin GTPase 1 [ Sus scrofa (pig) ]

Gene ID: 100158193, updated on 8-Mar-2024

Summary

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Official Symbol
ATL1provided by VGNC
Official Full Name
atlastin GTPase 1provided by VGNC
Primary source
VGNC:VGNC:85627
See related
Ensembl:ENSSSCG00000005020
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 4.5), lung (RPKM 2.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ATL1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (180299434..180407003)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (200606921..200696179)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase like 1 Neighboring gene uncharacterized LOC110262144 Neighboring gene uncharacterized LOC110262146 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 5 Neighboring gene uncharacterized LOC102161650 Neighboring gene salvador family WW domain containing protein 1 Neighboring gene ninein Neighboring gene translation initiation factor IF-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
atlastin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    180299434..180407003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101558.1 → XP_020957217.1  atlastin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SG47, A0A8D0NLV7, A0A8D1FH52, F1SHX5
    Related
    ENSSSCP00000005398.4, ENSSSCT00000005536.5
    Conserved Domains (1) summary
    pfam02263
    Location:43 → 314
    GBP; Guanylate-binding protein, N-terminal domain

  2. XM_013993393.2 → XP_013848847.1  atlastin-1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SG47, A0A8D0NLV7, A0A8D1FH52, F1SHX5
    Conserved Domains (1) summary
    pfam02263
    Location:43 → 314
    GBP; Guanylate-binding protein, N-terminal domain

  3. XM_013993394.2 → XP_013848848.1  atlastin-1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1SGI8, A0A8D0NLV7, A0A8D1FH52, F1SHX6
    Related
    ENSSSCP00000005397.4, ENSSSCT00000005535.5
    Conserved Domains (1) summary
    pfam02263
    Location:43 → 314
    GBP; Guanylate-binding protein, N-terminal domain

  4. XM_021101569.1 → XP_020957228.1  atlastin-1 isoform X3

    UniProtKB/TrEMBL
    A0A8D1CWI6
    Conserved Domains (1) summary
    cl21455
    Location:1 → 231
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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