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NOVA1 NOVA alternative splicing regulator 1 [ Sus scrofa (pig) ]

Gene ID: 100158068, updated on 8-Mar-2024

Summary

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Official Symbol
NOVA1provided by VGNC
Official Full Name
NOVA alternative splicing regulator 1provided by VGNC
Primary source
VGNC:VGNC:90827
See related
Ensembl:ENSSSCG00000024396
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 2.6), subcutaneous adipose (RPKM 2.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NOVA1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (72805138..72961257)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (78002491..78041732)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504458 Neighboring gene uncharacterized LOC102166401 Neighboring gene uncharacterized LOC110261582 Neighboring gene uncharacterized LOC110261583

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein Nova-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    72805138..72961257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021099190.1 → XP_020954849.1  RNA-binding protein Nova-1 isoform X1

    UniProtKB/TrEMBL
    A0A287A9A5, A0A4X1SU63, A0A8D1H5Z5, A0A8D1N7S3, A0A8W4FLZ1
    Related
    ENSSSCP00000080507.1, ENSSSCT00000101165.1
    Conserved Domains (3) summary
    cd09031
    Location:422 → 492
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:49 → 121
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:172 → 241
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  2. XM_021099191.1 → XP_020954850.1  RNA-binding protein Nova-1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1SUI3, A0A8D0LJF2, F1SGT5
    Related
    ENSSSCP00000024774.2, ENSSSCT00000031969.2
    Conserved Domains (3) summary
    cd09031
    Location:398 → 468
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:49 → 121
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:148 → 217
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)

  3. XM_021099192.1 → XP_020954851.1  RNA-binding protein Nova-1 isoform X3

    UniProtKB/TrEMBL
    A0A287BGC8, A0A4X1SUK3, A0A8D0LJF2, A0A8D0SEZ5
    Related
    ENSSSCP00000055103.1, ENSSSCT00000063556.3
    Conserved Domains (3) summary
    cd09031
    Location:385 → 455
    KH-I_NOVA_rpt3; third type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22435
    Location:12 → 84
    KH-I_NOVA_rpt1; first type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
    cd22436
    Location:135 → 204
    KH-I_NOVA_rpt2; second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
Nucleotide Protein
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