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PEX19 peroxisomal biogenesis factor 19 [ Sus scrofa (pig) ]

Gene ID: 100154884, updated on 8-Mar-2024

Summary

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Official Symbol
PEX19provided by VGNC
Official Full Name
peroxisomal biogenesis factor 19provided by VGNC
Primary source
VGNC:VGNC:104022
See related
Ensembl:ENSSSCG00000023091
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 17.6), subcutaneous adipose (RPKM 16.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PEX19 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (90196986..90213308)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (98087493..98095580)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene nescient helix-loop-helix 1 Neighboring gene nicastrin Neighboring gene COPI coat complex subunit alpha Neighboring gene 40S ribosomal protein S27-like Neighboring gene DDB1 and CUL4 associated factor 8 Neighboring gene proliferation and apoptosis adaptor protein 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peroxisome membrane targeting sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into peroxisome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisomal biogenesis factor 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    90196986..90213308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928869.5 → XP_001928904.2  peroxisomal biogenesis factor 19 isoform X1

    UniProtKB/TrEMBL
    A0A8D1EBC5
    Conserved Domains (1) summary
    pfam04614
    Location:112 → 337
    Pex19; Pex19 protein family

  2. XM_021089574.1 → XP_020945233.1  peroxisomal biogenesis factor 19 isoform X2

    UniProtKB/TrEMBL
    A0A8D1EBC5
    Conserved Domains (1) summary
    pfam04614
    Location:74 → 275
    Pex19; Pex19 protein family

  3. XM_013996874.2 → XP_013852328.1  peroxisomal biogenesis factor 19 isoform X3

    UniProtKB/TrEMBL
    A0A8D0YKL0, A0A8D1LIF2, I3LRG2, K7GSD8
    Related
    ENSSSCP00000026696.3, ENSSSCT00000030247.4
    Conserved Domains (1) summary
    pfam04614
    Location:46 → 271
    Pex19; Pex19 protein family
Nucleotide Protein
Heading Accession and Version

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