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PRPF38B pre-mRNA processing factor 38B [ Sus scrofa (pig) ]

Gene ID: 100154667, updated on 8-Mar-2024

Summary

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Gene symbol
PRPF38B
Gene description
pre-mRNA processing factor 38B
See related
Ensembl:ENSSSCG00000055828
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 39.3), lung (RPKM 34.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PRPF38B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (111338988..111347505, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (121836910..121846047, complement)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene syntaxin binding protein 3 Neighboring gene fibronectin type III domain containing 7 Neighboring gene uncharacterized LOC102160506 Neighboring gene uncharacterized LOC102160402

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor 38B
Names
PRP38 pre-mRNA processing factor 38 (yeast) domain containing B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    111338988..111347505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001927806.4 → XP_001927841.1  pre-mRNA-splicing factor 38B

    UniProtKB/TrEMBL
    A0A480K054, A0A8D1A7S7
    Related
    ENSSSCP00000059309.2, ENSSSCT00000040691.3
    Conserved Domains (1) summary
    pfam03371
    Location:50 → 230
    PRP38; PRP38 family
Nucleotide Protein
Heading Accession and Version

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