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MYO1E myosin IE [ Sus scrofa (pig) ]

Gene ID: 100154204, updated on 8-Mar-2024

Summary

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Official Symbol
MYO1Eprovided by VGNC
Official Full Name
myosin IEprovided by VGNC
Primary source
VGNC:VGNC:90528
See related
Ensembl:ENSSSCG00000004587
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 19.2), lung (RPKM 13.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MYO1E in Genome Data Viewer
Location:
chromosome: 1
Exon count:
29
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (112677545..112902005)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (124676396..124901516)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene general transcription factor IIA subunit 2 Neighboring gene glucosaminyl (N-acetyl) transferase 3, mucin type Neighboring gene family with sequence similarity 81 member A Neighboring gene cyclin B2 Neighboring gene ring finger protein 111

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microfilament motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle transport along actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microvillus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
unconventional myosin-Ie

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    112677545..112902005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003353343.5 → XP_003353391.2  unconventional myosin-Ie isoform X1

    See identical proteins and their annotated locations for XP_003353391.2

    UniProtKB/TrEMBL
    A0A0B8RSK1, A0A480M6K2, A0A4X1TQX9, A0A8D1B5A4, A0A8D1QFS5
    Related
    ENSSSCP00000072733.1, ENSSSCT00000076955.1
    Conserved Domains (3) summary
    cd11827
    Location:1056 → 1107
    SH3_MyoIe_If_like; Src homology 3 domain of Myosins Ie, If, and similar proteins
    cd01378
    Location:33 → 679
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:719 → 920
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding

  2. XM_021073512.1 → XP_020929171.1  unconventional myosin-Ie isoform X2

    UniProtKB/TrEMBL
    A0A0B8RSK1, A0A480M6K2, A0A4X1TQX9, A0A8D1B5A4, A0A8D1QFS5
    Related
    ENSSSCP00000054858.3, ENSSSCT00000063902.3
    Conserved Domains (3) summary
    cd11827
    Location:1056 → 1107
    SH3_MyoIe_If_like; Src homology 3 domain of Myosins Ie, If, and similar proteins
    cd01378
    Location:33 → 679
    MYSc_Myo1; class I myosin, motor domain
    pfam06017
    Location:719 → 920
    Myosin_TH1; Unconventional myosin tail, actin- and lipid-binding
Nucleotide Protein Strain
Heading Accession and Version

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