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TCTN1 tectonic family member 1 [ Sus scrofa (pig) ]

Gene ID: 100153308, updated on 17-Aug-2024

Summary

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Official Symbol
TCTN1provided by VGNC
Official Full Name
tectonic family member 1provided by VGNC
Primary source
VGNC:VGNC:93839
See related
Ensembl:ENSSSCG00000009826
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 12.7), kidney (RPKM 10.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TCTN1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (31953996..32010202)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (33898457..33932334)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene VPS29 retromer complex component Neighboring gene RAD9 checkpoint clamp component B Neighboring gene protein phosphatase targeting COQ7 Neighboring gene hydrogen voltage gated channel 1 Neighboring gene protein phosphatase 1 catalytic subunit gamma Neighboring gene coiled-coil domain containing 63 Neighboring gene myosin light chain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MKS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tectonic-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    31953996..32010202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021074349.1 → XP_020930008.1  tectonic-1 isoform X3

    Conserved Domains (1) summary
    pfam07773
    Location:1 → 239
    DUF1619; Protein of unknown function (DUF1619)

  2. XM_013982866.2 → XP_013838320.1  tectonic-1 isoform X1

    UniProtKB/TrEMBL
    A0A480JQD0, A0A4X1U4H6, A0A8D0P694, A0A8D1V318
    Conserved Domains (1) summary
    pfam07773
    Location:78 → 388
    DUF1619; Protein of unknown function (DUF1619)

  3. XM_021074348.1 → XP_020930007.1  tectonic-1 isoform X2

    UniProtKB/TrEMBL
    A0A481CEA1, A0A8D0RQW1, A0A8D1V3P8, F1RNM5
    Related
    ENSSSCP00000010489.5, ENSSSCT00000010769.5
    Conserved Domains (1) summary
    pfam07773
    Location:78 → 346
    DUF1619; Protein of unknown function (DUF1619)

  4. XM_001929436.6 → XP_001929471.1  tectonic-1 isoform X1

    UniProtKB/TrEMBL
    A0A480JQD0, A0A4X1U4H6, A0A8D0P694, A0A8D1V318
    Related
    ENSSSCP00000070476.1, ENSSSCT00000081335.1
    Conserved Domains (1) summary
    pfam07773
    Location:78 → 388
    DUF1619; Protein of unknown function (DUF1619)

  5. XM_021074350.1 → XP_020930009.1  tectonic-1 isoform X3

    Conserved Domains (1) summary
    pfam07773
    Location:1 → 239
    DUF1619; Protein of unknown function (DUF1619)

  6. XM_021074351.1 → XP_020930010.1  tectonic-1 isoform X3

    Conserved Domains (1) summary
    pfam07773
    Location:1 → 239
    DUF1619; Protein of unknown function (DUF1619)
Nucleotide Protein
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