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ACAT2 acetyl-CoA acetyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100152303, updated on 8-Mar-2024

Summary

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Official Symbol
ACAT2provided by VGNC
Official Full Name
acetyl-CoA acetyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:85005
See related
Ensembl:ENSSSCG00000004049
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 22.0), subcutaneous adipose (RPKM 19.9) and 8 other tissues See more
Orthologs
human all
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (7600616..7612861, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (9399574..9411820, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene PARN like ribonuclease domain containing exonuclease 1 Neighboring gene mitochondrial ribosomal protein L18 Neighboring gene t-complex 1 Neighboring gene WT1 associated protein Neighboring gene translation initiation factor IF-2 Neighboring gene superoxide dismutase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. An approach to identify SNPs in the gene encoding acetyl-CoA acetyltransferase-2 (ACAT-2) and their proposed role in metabolic processes in pig. Sodhi SS, et al. PLoS One, 2014. PMID 25050817, Free PMC Article
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ACAT2 might contribute more to metabolic processes than ACAA2 in swine.
    Title: An approach to identify SNPs in the gene encoding acetyl-CoA acetyltransferase-2 (ACAT-2) and their proposed role in metabolic processes in pig.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetyl-CoA C-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-CoA acetyltransferase, cytosolic
Names
Acetyl-Coenzyme A acetyltransferase 2
sterol O-acyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    7600616..7612861 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001928345.4 → XP_001928380.1  acetyl-CoA acetyltransferase, cytosolic

    See identical proteins and their annotated locations for XP_001928380.1

    UniProtKB/TrEMBL
    A0A0B8RZS7, A0A287AHQ0, A0A4X1VWU7, A0A8D1UIK9
    Related
    ENSSSCP00000043380.1, ENSSSCT00000039899.2
    Conserved Domains (2) summary
    PRK05790
    Location:8 → 396
    PRK05790; putative acyltransferase; Provisional
    cd00751
    Location:9 → 396
    thiolase; Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and ...
Nucleotide Protein Strain
Heading Accession and Version

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