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JPH4 junctophilin 4 [ Equus caballus (horse) ]

Gene ID: 100146374, updated on 8-Mar-2024

Summary

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Gene symbol
JPH4
Gene description
junctophilin 4
See related
Ensembl:ENSECAG00000012153
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See JPH4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 1 NC_009144.3 (163436583..163446092, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 1 NC_009144.2 (161640717..161650260, complement)

Chromosome 1 - NC_009144.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102150282 Neighboring gene zinc finger homeobox 2 Neighboring gene thiamine triphosphatase Neighboring gene adaptor related protein complex 1 subunit gamma 2 Neighboring gene dehydrogenase/reductase 2 Neighboring gene dehydrogenase/reductase SDR family member 2, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of junctional membrane complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
junctophilin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009144.3 Reference EquCab3.0 Primary Assembly

    Range
    163436583..163446092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023622542.1 → XP_023478310.1  junctophilin-4 isoform X2

    UniProtKB/TrEMBL
    A0A9L0R2P4
    Related
    ENSECAP00000058344.1, ENSECAT00000103423.1
    Conserved Domains (2) summary
    cl26386
    Location:369 → 606
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl27415
    Location:5 → 143
    COG4642; Uncharacterized conserved protein [Function unknown]

  2. XM_023622534.1 → XP_023478302.1  junctophilin-4 isoform X1

    UniProtKB/TrEMBL
    A0A9L0R2P4, F6TE45
    Related
    ENSECAP00000009916.3, ENSECAT00000012551.4
    Conserved Domains (2) summary
    cl26386
    Location:369 → 601
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
    cl27415
    Location:5 → 143
    COG4642; Uncharacterized conserved protein [Function unknown]
Nucleotide Protein
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