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smc4 structural maintenance of chromosomes 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145810, updated on 2-May-2024

Summary

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Official Symbol
smc4provided by Xenbase
Official Full Name
structural maintenance of chromosomes 4provided by Xenbase
Primary source
Xenbase:XB-GENE-5865855
See related
Ensembl:ENSXETG00000008717
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
xsmc4; XCAP-C; hCAP-C; smc4l1
Orthologs
human mouse all
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Genomic context

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See smc4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
24
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (114764797..114793406, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (103338406..103366992, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene karyopherin alpha 4 (importin alpha 3) Neighboring gene small Cajal body-specific RNA 7 Neighboring gene tripartite motif containing 59 Neighboring gene microRNA mir-16b Neighboring gene microRNA mir-15b Neighboring gene intraflagellar transport 80 Neighboring gene chromosome 5 C3orf80 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromosome organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
structural maintenance of chromosomes protein 4
Names
smc4 structural maintenance of chromosomes 4-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    114764797..114793406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933237.5 → XP_002933283.1  structural maintenance of chromosomes protein 4

    See identical proteins and their annotated locations for XP_002933283.1

    UniProtKB/TrEMBL
    A0A6I8SGS9, A0A8J0QN52
    Related
    ENSXETP00000091620.2, ENSXETT00000096598.2
    Conserved Domains (1) summary
    pfam02463
    Location:73 → 1264
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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Research Materials