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cdh4 cadherin 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144729, updated on 25-Apr-2024

Summary

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Official Symbol
cdh4provided by Xenbase
Official Full Name
cadherin 4provided by Xenbase
Primary source
Xenbase:XB-GENE-958013
See related
Ensembl:ENSXETG00000049321
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
cad4; rcad; mi-2beta; XMi-2Beta; R-cadherin; cadherin-4
Orthologs
human mouse all
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Genomic context

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See cdh4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (3999689..4338418)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016688213.1 (983..3075)

Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116408050 Neighboring gene serine/threonine-protein kinase N2 Neighboring gene TATA-box binding protein associated factor 4 Neighboring gene LSM family member 14B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cadherin-4
Names
cadherin 4, type 1, R-cadherin (retinal)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123479.1 → NP_001116951.1  cadherin-4 precursor

    See identical proteins and their annotated locations for NP_001116951.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161139
    UniProtKB/TrEMBL
    A0A803JE56, B1H2V0
    Related
    ENSXETP00000106184.1, ENSXETT00000116952.1
    Conserved Domains (3) summary
    cd11304
    Location:287 → 394
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08758
    Location:39 → 129
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:179 → 279
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    3999689..4338418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031893969.1 → XP_031749829.1  cadherin-4 isoform X1

    UniProtKB/TrEMBL
    A0A803JIV4, A0A803KDA3
    Related
    ENSXETP00000118377.1, ENSXETT00000122329.1
    Conserved Domains (5) summary
    cd11304
    Location:287 → 394
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:767 → 919
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:39 → 129
    Cadherin_pro; Cadherin prodomain like
    cl28889
    Location:179 → 279
    CA_like; Cadherin repeat-like domain
    cl29226
    Location:625 → 717
    Cadherin; Cadherin domain

  2. XM_031893970.1 → XP_031749830.1  cadherin-4 isoform X2

    UniProtKB/TrEMBL
    A0A803JIV4, A0A8J1IYJ6
    Conserved Domains (5) summary
    cd11304
    Location:287 → 394
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:751 → 903
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:39 → 129
    Cadherin_pro; Cadherin prodomain like
    cl28889
    Location:179 → 279
    CA_like; Cadherin repeat-like domain
    cl29226
    Location:625 → 717
    Cadherin; Cadherin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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