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LOC100136972 cryptochrome-1 [ Triticum aestivum (bread wheat) ]

Gene ID: 100136972, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100136972
Gene description
cryptochrome-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Triticum aestivum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Also known as
Cry2
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Genomic context

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See LOC100136972 in Genome Data Viewer
Location:
chromosome: 6B
Exon count:
5
Annotation release Status Assembly Chr Location
100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 6B NC_057810.1 (470319864..470325413)

Chromosome 6B - NC_057810.1Genomic Context describing neighboring genes Neighboring gene inositol phosphorylceramide glucuronosyltransferase 1-like Neighboring gene probable inorganic phosphate transporter 1-8 Neighboring gene pentatricopeptide repeat-containing protein At4g18840-like Neighboring gene phosphoenolpyruvate carboxylase kinase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057810.1 Chromosome 6B Reference IWGSC CS RefSeq v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Wheat cryptochromes: subcellular localization and involvement in photomorphogenesis and osmotic stress responses. Xu P, et al. Plant Physiol, 2009 Feb. PMID 19052154, Free PMC Article
  2. A TRIM insertion in the promoter of Ms2 causes male sterility in wheat. Xia C, et al. Nat Commun, 2017 May 12. PMID 28497807, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables blue light photoreceptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blue light signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cryptochrome-1
Names
cryptochrome 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IWGSC CS RefSeq v2.1 Primary Assembly

Genomic

  1. NC_057810.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Range
    470319864..470325413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044557306.1 → XP_044413241.1  cryptochrome-1 isoform X2

    UniProtKB/TrEMBL
    A0A3B6NPE8, A0A3B6PMR8
    Conserved Domains (1) summary
    cl30787
    Location:8 → 486
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]

  2. XM_044557305.1 → XP_044413240.1  cryptochrome-1 isoform X1

    UniProtKB/TrEMBL
    A9Q6J0, A9Q6J1
    Conserved Domains (1) summary
    cl30787
    Location:8 → 486
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

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