myod1 myogenic differentiation 1 [Salmo salar (Atlantic salmon)] - Gene

Summary

Gene symbol: myod1
Gene description: myogenic differentiation 1
See related: Ensembl:ENSSSAG00000040107
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Salmo salar
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

Location:: chromosome: ssa11

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
102	current	Ssal_v3.1 (GCF_905237065.1)	ssa11	NC_059452.1 (47539824..47541896)
100	previous assembly	ICSASG_v2 (GCF_000233375.1)	ssa11	NC_027310.1 (32784618..32786690)

Chromosome ssa11 - NC_059452.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info	PubMed
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in muscle organ development	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of myoblast differentiation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: myoblast determination protein 1 homolog

Names: myoblast determination protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001123637.1 → NP_001117109.1 myoblast determination protein 1 homolog

See identical proteins and their annotated locations for NP_001117109.1

Status: PROVISIONAL

Source sequence(s)

AJ557148

UniProtKB/TrEMBL

Q7ZZN1

Related

ENSSSAP00000031238.1, ENSSSAT00000056563.2

Conserved Domains (3) summary

smart00520
Location:1 → 89

BASIC; Basic domain in HLH proteins of MYOD family

pfam00010
Location:85 → 136

HLH; Helix-loop-helix DNA-binding domain

pfam12232
Location:147 → 221

Myf5; Myogenic determination factor 5