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LOC100135906 vitelline envelope protein alpha [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135906, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100135906
Gene description
vitelline envelope protein alpha
See related
Ensembl:ENSOMYG00000032909
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC100135906 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (77963501..77969044)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (62269947..62275570)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene genetic suppressor element 1-like Neighboring gene ubiquitin-conjugating enzyme E2 H Neighboring gene leucine-rich repeat-containing protein 17-like Neighboring gene F-box and leucine-rich repeat protein 13 Neighboring gene mucin-5AC Neighboring gene putative uncharacterized protein DDB_G0271982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of rainbow trout egg envelope proteins: members of a unique group of structural proteins. Hyllner SJ, et al. Biol Reprod, 2001 Mar. PMID 11207195

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acrosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of egg coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in binding of sperm to zona pellucida IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in prevention of polyspermy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in egg coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vitelline envelope protein alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124273.1 → NP_001117745.1  vitelline envelope protein alpha precursor

    See identical proteins and their annotated locations for NP_001117745.1

    Status: PROVISIONAL

    Source sequence(s)
    AF231706
    UniProtKB/TrEMBL
    A0A8C7W5U4, Q9I9M8
    Related
    ENSOMYP00000071204.2, ENSOMYT00000077527.2
    Conserved Domains (4) summary
    smart00018
    Location:203 → 243
    PD; P or trefoil or TFF domain
    smart00241
    Location:246 → 530
    ZP; Zona pellucida (ZP) domain
    pfam00100
    Location:394 → 529
    Zona_pellucida; Zona pellucida-like domain
    pfam14650
    Location:66 → 128
    FAM75; FAM75 family

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    77963501..77969044
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials