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LOC100135782 retinal arylalkylamine N-acetyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 100135782, updated on 14-Dec-2023

Summary

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Gene symbol
LOC100135782
Gene description
retinal arylalkylamine N-acetyltransferase
See related
Ensembl:ENSOMYG00000027280
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 13 NC_048577.1 (45651896..45654777, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 13 NC_035089.1 (42381492..42384425, complement)

Chromosome 13 - NC_048577.1Genomic Context describing neighboring genes Neighboring gene probable ATP-dependent RNA helicase DDX5 Neighboring gene envoplakin Neighboring gene sphingosine kinase 1-like Neighboring gene uncharacterized LOC110486552 Neighboring gene small nucleolar RNA R38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular Cloning and Characterization of a cDNA Encoding the Retinal Arylalkylamine N-Acetyltransferase of the Rainbow Trout, Oncorhynchus mykiss. Mizusawa K, et al. Zoolog Sci, 1998 Jun 1. PMID 18465997

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aralkylamine N-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
retinal arylalkylamine N-acetyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001124180.1 → NP_001117652.1  retinal arylalkylamine N-acetyltransferase

    See identical proteins and their annotated locations for NP_001117652.1

    Status: PROVISIONAL

    Source sequence(s)
    AB007294
    UniProtKB/TrEMBL
    A0A8C7S2J1, Q9YGF8
    Related
    ENSOMYP00000059105.1, ENSOMYT00000064340.2
    Conserved Domains (1) summary
    cl17182
    Location:29 → 197
    NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048577.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    45651896..45654777 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021556128.2 → XP_021411803.1  retinal arylalkylamine N-acetyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A060X0A9, A0A8K9X994
    Related
    ENSOMYP00000059094.1, ENSOMYT00000064329.2
    Conserved Domains (1) summary
    pfam00583
    Location:43 → 169
    Acetyltransf_1; Acetyltransferase (GNAT) family
Nucleotide Protein
Heading Accession and Version

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