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sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100135101, updated on 8-Mar-2024

Summary

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Official Symbol
sema4aprovided by Xenbase
Official Full Name
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Aprovided by Xenbase
Primary source
Xenbase:XB-GENE-5914424
See related
Ensembl:ENSXETG00000018164
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See sema4a in Genome Data Viewer
Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (142853401..142910981, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683718.1 (39408..55225, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100487175 Neighboring gene small conductance calcium-activated potassium channel protein 3 Neighboring gene lamin A/C Neighboring gene mex-3 RNA binding family member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
semaphorin-4A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113839.1 → NP_001107311.1  semaphorin-4A precursor

    See identical proteins and their annotated locations for NP_001107311.1

    Status: PROVISIONAL

    Source sequence(s)
    BC155707
    UniProtKB/TrEMBL
    A0A6I8R142, A9JRL7
    Related
    ENSXETP00000039399.5, ENSXETT00000039399.5
    Conserved Domains (3) summary
    cd11256
    Location:42 → 492
    Sema_4A; The Sema domain, a protein interacting module, of semaphorin 4A (Sema4A)
    smart00423
    Location:493 → 536
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:572 → 643
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    142853401..142910981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031906890.1 → XP_031762750.1  semaphorin-4A isoform X2

    UniProtKB/TrEMBL
    A0A6I8R142, F6V936
    Related
    ENSXETP00000089184.2, ENSXETT00000080797.2
    Conserved Domains (4) summary
    smart00423
    Location:493 → 536
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:572 → 580
    Ig; Ig strand B [structural motif]
    cl11960
    Location:572 → 643
    Ig; Immunoglobulin domain
    cl15693
    Location:42 → 492
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_031906888.1 → XP_031762748.1  semaphorin-4A isoform X2

    UniProtKB/TrEMBL
    A0A6I8R142, F6V936
    Conserved Domains (4) summary
    smart00423
    Location:493 → 536
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:572 → 580
    Ig; Ig strand B [structural motif]
    cl11960
    Location:572 → 643
    Ig; Immunoglobulin domain
    cl15693
    Location:42 → 492
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_031906889.1 → XP_031762749.1  semaphorin-4A isoform X2

    UniProtKB/TrEMBL
    A0A6I8R142, F6V936
    Conserved Domains (4) summary
    smart00423
    Location:493 → 536
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:572 → 580
    Ig; Ig strand B [structural motif]
    cl11960
    Location:572 → 643
    Ig; Immunoglobulin domain
    cl15693
    Location:42 → 492
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_031906887.1 → XP_031762747.1  semaphorin-4A isoform X1

    UniProtKB/TrEMBL
    A0A6I8RVN7, A0A8J1JXX3
    Conserved Domains (4) summary
    smart00423
    Location:533 → 576
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:612 → 620
    Ig; Ig strand B [structural motif]
    cl11960
    Location:612 → 683
    Ig; Immunoglobulin domain
    cl15693
    Location:82 → 532
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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